Great question. The IRS has an informative 10-minute video on this very question:
https://www.irsvideos.gov/Governments/Employers/10MinutesOnReconcilingForms941W-3W-2ToGrossPayroll
Employers who reconcile payroll can avoid discrepancies by ensuring employees’ wages and taxes reported to both the Internal Revenue Service, IRS, and the Social Security Administration, SSA, match.
Completion of the payroll reconciliation usually results in more accurate payroll wages and taxes reported on quarterly Forms 941 or annual Form 944, fewer Forms W-2C, Corrected Wage and tax statements are needed, and fewer notices are received from the IRS or SSA.
You will need data from your payroll accounting system to complete the reconciliation.
The data should include: total gross payroll for the year, annual totals for each employee’s pretax and after-tax payroll deduction, if any employees were paid over the Social Security wage base, youwill need to compute the total amount of their individual wages that exceed the wage base limit.
The wage base limit is announced annually.
You will also need the quarterly Forms 941, or an annual Form 944.
And finally your Forms W-2 and Form W-3.
If filing electronically, the Form W3 will be reflected in the totals of Form W2.
Step one is to validate the gross payroll amount.
Gross payroll includes all payments and benefits given to your employees including: salaries, hourly pay and overtime, sick and vacation leave, allowances like vehicles and uniforms, taxable group term life insurance, any other payments like bonuses or taxable benefits unique to your employees.
Verify that all payments and non-cash benefits provided to or for employees have been considered in the determination of their compensation.
Step two is to verify all the amounts for pre-tax and after-tax deductions are included and correctly coded in your payroll system to be subtracted from gross payroll as applicable to arrive at total Medicare, Social Security, and federal income tax wage amounts.
Examples of pre-tax deductions could include: health and dental insurance, medical flexible spending arrangements, dependent care, and certain retirement plan contributions.
After-tax deductions could include such items as: employee’s share of insurance policies outside cafeteria plans, union dues, garnishments, employment taxes, and other items unique to youremployees.
Step three is to ensure the amounts on the Form W-3 are the total amounts from the W-2.
Add the amount in Box 5 for all Forms W-2 for Medicare wages and tips and compare it to the total Form W-3 amount.
Also do this for Box 3, Social Security Wages, and Box 1, Wages, Tips, and Other Compensation.
Also, review the taxes withheld in Boxes 2, 4, and 6.
If wages include tips, compare Social Security Tips found in Box 7.
If they do not match, Forms W-2 wage amounts should be compared to individual employees’ gross payroll minus their tax deductions and Social Security wage base limit adjustment amount asapplicable.
Multiplying the wage amounts times the applicable employee tax rates should match those amounts shown as Medicare and Social Security taxes on the Form W-2.
Step four is to determine if the Medicare, Social Security, and Federal Income Tax wages, as well as applicable taxes withheld, reported on the quarterly Forms 941 or annual Form 944 match those on the Form W-3 for that year.
Note: The Form 941 or Form 944 amounts for Medicare taxes withheld and Social Security taxes withheld need to be divided by two to adjust for the employer’s share of these taxes to match theForm W-3 amount.
If there is a discrepancy between the Forms 941 or Form 944 and the Form W-2 totals, you may receive a notice from the SSA or IRS asking for an explanation.
There may be valid reasons for Forms 941 or Form 944 and the W-2 amounts not to match and you should have records to document what those reasons are.
See Publication 15, Employer’s Tax Guide, for more information.
Let’s look at an example.
Records document a gross payroll of $1 million and the following items: health insurance of $120,000.00, dental insurance of $80,000.00, Social Security wage base limitation adjustment of$50,000.00, and retirement plan contributions of $150,000.00.
We begin by reconciling the Medicare wages and tips, usually the largest compensation figure reported.
Review the pre-tax categories to determine which ones are exempt from Medicare and subtract them from the gross payroll amount.
In our example they are: health insurance of $120,000.00 and dental insurance of $80,000.00, totaling $200,000.00 to be subtracted from the $1 million gross payroll amount.
This results in $800,000.00 of taxable Medicare wages and tips that should be recorded in Box 5 of Form W-3 or the total of Box 5 of Form W-2s, and be the total of Medicare wages on the Forms 941 or Form 944.
Box 6 of the Form W-3 should show $11,600.00 of employee Medicare taxes withheld, and $23,200.00 should be the total of Lines 5(c) Column 2 of the Forms 941 or Line 4(c) Column 2 of the 944.
Next we will reconcile the Social Security wages.
The following pretax deductions are tax exempt from Social Security wages and subtracted from the $1 million gross payroll amount: health insurance of $120,000.00, dental insurance of $80,000.00, and the Social Security wage base limitation adjustment amount of $50,000.00, totaling $250,000.00 to be subtracted from the $1 million gross payroll amount.
This results in $750,000.00 taxable Social Security wages that should be reported in Box 3 of the Form W-3 or the total Box 3 of the Form W-2s and be the total of Social Security wages on the Forms 941 or Form 944.
Box 4 of the Form W-3 should show $46,500.00 of employee Social Security taxes withheld and $93,000.00 should be the totals of Lines 5(a) Column 2 of the Forms 941 or on Line 4(a) Column 2 ofthe Form 944.
Note: If tip amounts are involved, please see the instructions for Box 7 of the Form W-3, Line 5(b)
Column 1 of the Form 941, or Line 4(b) Column 1 of the Form 944.
The same reconciliation process should be completed for this item.
Lastly, the reconciliation of Wages, Tips and Compensation, also referred to as Federal Income Taxable, FIT, wages will be completed in the same manner as shown for the Medicare and SocialSecurity wages.
The following pretax deductions are exempt from FIT wages and subtracted from the $1 million gross payroll amount: health insurance of $120,000.00, dental insurance of $80,000.00, and the retirement plan contributions of $150,000.00.
Thus, $350,000.00 is subtracted from the $1 million gross payroll amount.
This results in $650,000.00 of taxable federal income wages that should be reported in Box 1 of the Form W-3 or the total of Box 1 of the Form W-2s and be the total of Lines 2 of the Form 941 or onLine 1 of the Form 944.
Now that we have completed the payroll reconciliation, here are a few final tips for more accurate payroll information reported to the government and sent to your employees.
Number one, make sure that any late adjustments to payroll that are included in the fourth quarter Form 941 or annual Form 944 are reported on the Forms W-2 and W-3.
Number two, complete the payroll reconciliation once the year-end payroll is finalized and prior to sending the fourth quarter Form 941 or the annual Form 944 to the IRS and sending the Forms W-2 to employees to prevent them from having to file amendments and delay the employees’ ability to file their personal income tax returns.
Number three, annually review Section 12 of the Publication 15, Employer’s Tax Guide, Publication 15-B, Employer’s Tax Guide to Fringe Benefits, and Publication 963, the Federal State ReferenceGuide that provides state and local government employers a comprehensive reference source on Social Security and Medicare coverage.
And also federal tax withholding issues.
And finally, if you receive a letter from the IRS about a discrepancy in your reported wages, call the telephone number listed on the letter for assistance.
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